{"id":1344,"date":"2023-07-25T01:21:07","date_gmt":"2023-07-25T01:21:07","guid":{"rendered":"https:\/\/fabiogori.ai\/?page_id=1344"},"modified":"2023-07-30T05:10:02","modified_gmt":"2023-07-30T05:10:02","slug":"publications","status":"publish","type":"page","link":"https:\/\/fabiogori.ai\/it\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"

\n\t\t\t\t\tPublications\n\t\t\t\t<\/h1>\n\t

\n\t\t\t\t\tWriting about AI to Make it More Understandable\n\t\t\t\t<\/h2>\n\t
I write about AI, machine learning, and bioinformatics, trying to make technical concepts accessible to everybody. Most of my public writing is made by scientific papers, but for industrial projects I am used to write also tutorials and documentations.<\/p>\n\t \n

Journals (first author)<\/h3>\n
\n
F. Gori, G. Folino, M. S. M. Jetten, and E. Marchiori. MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks. Bioinformatics<\/em>, 27(2):196-203, 2011a. doi: 10.1093\/bioinformatics\/btq649. URL http:\/\/bioinformatics.oxfordjournals.org\/content\/27\/2\/196.abstract<\/a><\/li>\n
F. Gori, S. G. Tringe, G. Folino, S. A. F. T. van Hijum, H. J. M. Op den Camp, M. S. M. Jetten, and E. Marchiori. Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes. BMC Genomics<\/em>, 14:7, 2013. doi: 10.1186\/1471-2164-14-7. URL http:\/\/www.biomedcentral.com\/1471-2164\/14\/7<\/a><\/li>\n
F. Gori, S. G. Tringe, B. Kartal, E. Marchiori, and M. S. M. Jetten. The metagenomic basis of anammox metabolism in Candidatus ‘Brocadia fulgida’. Biochemical Society Transactions<\/em>, 39:1799 – 1804, 2011c. doi: 10.1042\/BST20110707. URL https:\/\/portlandpress.com\/biochemsoctrans\/article-abstract\/39\/6\/1799\/66793\/The-metagenomic-basis-of-anammox-metabolism-in<\/a><\/li>\n<\/ul>\n
Journals (co-first author)<\/h3>\n
\n
A. Fuentes-Hernandez, J. Plucain, F. Gori, R. Peña-Miller, G. Jansen, H. Schulenburg, I. Gudelj, and R. Beardmore. Using a sequential regimen to eliminate bacteria at sublethal antibiotic dosages. PLOS Biology<\/em>, 13(4):e1002104, 04 2015. doi: 10.1371\/journal.pbio.1002104. URL http:\/\/dx.doi.org\/10.1371%2Fjournal.pbio.1002104<\/a><\/li>\n<\/ul>\n
Journals (co-author)<\/h3>\n
\n
R. E. Beardmore, R. Peña-Miller, F. Gori, and J. Iredell. Antibiotic cycling and antibiotic mixing: which one best mitigates antibiotic resistance? Molecular Biology and Evolution<\/em>, 2017. doi: 10.1093\/molbev\/msw292. URL http:\/\/mbe.oxfordjournals.org\/content\/early\/2017\/01\/09\/molbev.msw292.abstract<\/a><\/li>\n
Carlos Reding-Roman, Mark Hewlett, Sarah Duxbury, Fabio Gori, Ivana Gudelj, and Robert Beardmore. The unconstrained evolution of fast and efficient antibiotic-resistant bacterial genomes. Nature Ecology & Evolution<\/em>, 1:0050, jan 2017. doi: 10.1038\/s41559-016-0050. URL https:\/\/doi.org\/10.1038%2Fs41559-016-0050<\/a><\/li>\n<\/ul>\n
Pre-print (first author)<\/h3>\n
\n
Fabio Gori, Dimitrios Mavroeidis, Mike S. M. Jetten, and Elena Marchiori. The importance of Chargaff’s second parity rule for genomic signatures in metagenomics. bioRxiv<\/em>, 2017. doi: 10.1101\/146001. URL http:\/\/biorxiv.org\/content\/early\/2017\/06\/04\/146001<\/a><\/li>\n<\/ul>\n
Conference Proceedings<\/h3>\n
\n
F. Gori, D. Mavroeidis, M. S. M. Jetten, and E. Marchiori. Genomic signatures for metagenomic data analysis: exploiting the reverse complementarity of tetranucleotides. In Proceedings of the 5th IEEE International Conference on Systems Biology (ISB)<\/em>, pages 149 -154, sept. 2011b. doi: 10.1109\/ISB.2011.6033147. URL https:\/\/ieeexplore.ieee.org\/document\/6033147<\/a> Gori_signature_metagenomics_ISB_2011.pdf<\/li>\n
G. Folino, F. Gori, M. S. M. Jetten, and E. Marchiori. Clustering metagenome short reads using weighted proteins. In Proceedings of the 7th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO)<\/em>, number 5483 in LNCS, pages 152-163, 2009b. doi: https:\/\/doi.org\/10.1007\/978-3-642-01184-9_14. URL https:\/\/repository.ubn.ru.nl\/handle\/2066\/75322<\/a><\/li>\n
G. Folino, F. Gori, M. S. M. Jetten, and E. Marchiori. Evidence-based clustering of reads and taxonomic analysis of metagenomic data. In Proceedings of the 4th IAPR International Conference in Pattern Recognition in Bioinformatics (PRIB)<\/em>, number 5780 in LNBI, pages 102-112, 2009a. doi: https:\/\/doi.org\/10.1007\/978-3-642-04031-3_10. URL https:\/\/repository.ubn.ru.nl\/bitstream\/handle\/2066\/105783\/105783.pdf<\/a><\/li>\n<\/ul>\n
Posters<\/h3>\n
\n
G. Folino, F. Gori, M. S. M. Jetten, and E. Marchiori. Optimal BLAST-based clustering of metagenome short reads.
\nPoster at ISMB\/ECCB<\/em>, 2009<\/li>\n<\/ul>\n
Other Conferences<\/h3>\n
\n
Co-author of talk: Quantitative analysis of human equilibrative nucleoside transporter-1, deoxycytidine kinase , 5’-
\nnucleotidase, cytidine deaminase and ribonucleotide reductase subunits m1 and m2 in pancreas cancer patients treated
\nwith gemcitabine. A. La Spina, M. Iannopollo, I. Celi, F. Gori, C. Orlandini, M. Ricasoli, E. Giovannetti, G. Bevilacqua,
\nF. Mosca, M. Del Tacca, R. Danesi, S. Ricci. The 11th National Congress of Medical Oncology (“XI Congresso Nazionale
\ndi Oncologia Medica“)<\/em>, 10-13 October 2009, Milan, Italy.<\/li>\n
Co-author of talk: Medical Databases: difficulties and diagnosis perspectives. G. Fiorentino, A. La Spina, F. Gori, I. Celi.
\nThe 2nd International Conference on Cancer Risk Assessment (ICCRA 2) – Mathematical, Statistical and Computational
\nMethods<\/em>, May 25-27, 2007, Santorini, Greece.<\/li>\n
Co-author of talk: Database medici: difficolta` e prospettive per la diagnosi. (Italian version of the previous talk) G.
\nFiorentino, A. La Spina, F. Gori, I. Celi. Matematica e Diagnosi medica<\/em>, January 9, 2007, Pisa, Italy.<\/li>\n<\/ul>\n <\/body>\n\n\t\tPer qualsiasi domanda,
non esitate a contattarmi all'indirizzo info@fabiogori.ai\n\t<\/h2>\n\t
Estraiamo pi\u00f9 valore dai tuoi dati. Insieme, possiamo identificare come tramite idati possiamo ricavare informazioni utili, migliorare processi e sviluppare nuovi prodotti.<\/p>\n\t\t\t\n\t\t\t\t\t\t\tLET’S WORK TOGETHER\n\t\t\t<\/a>","protected":false},"excerpt":{"rendered":"
Publications Writing about AI to Make it More Understandable I write about AI, machine learning, and bioinformatics, trying to make technical concepts accessible to everybody. Most of my public writing is made by scientific papers, but for industrial projects I am used to write also tutorials and documentations. Journals (first author) F. Gori, G. Folino, …<\/p>\n
Publications<\/span> Leggi altro »<\/a><\/p>","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"om_disable_all_campaigns":false,"_uag_custom_page_level_css":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"site-sidebar-layout":"no-sidebar","site-content-layout":"page-builder","ast-site-content-layout":"","site-content-style":"default","site-sidebar-style":"default","ast-global-header-display":"","ast-banner-title-visibility":"","ast-main-header-display":"","ast-hfb-above-header-display":"","ast-hfb-below-header-display":"","ast-hfb-mobile-header-display":"","site-post-title":"disabled","ast-breadcrumbs-content":"disabled","ast-featured-img":"disabled","footer-sml-layout":"","theme-transparent-header-meta":"enabled","adv-header-id-meta":"","stick-header-meta":"","header-above-stick-meta":"","header-main-stick-meta":"","header-below-stick-meta":"","astra-migrate-meta-layouts":"","two_page_speed":[],"footnotes":"","_links_to":"","_links_to_target":""},"class_list":["post-1344","page","type-page","status-publish","hentry"],"yoast_head":"\nPublications - Dr Fabio Gori<\/title>\n<meta name=\"description\" content=\"Public Speaking about AI for C-level, life sciences, scientific congress, conference\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.fabiogori.ai\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"it_IT\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications - Dr Fabio Gori\" \/>\n<meta property=\"og:description\" content=\"Public Speaking about AI for C-level, life sciences, scientific congress, conference\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.fabiogori.ai\/publications\/\" \/>\n<meta property=\"og:site_name\" content=\"Dr Fabio Gori\" \/>\n<meta property=\"article:modified_time\" content=\"2023-07-30T05:10:02+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:site\" content=\"@igorfobia\" \/>\n<meta name=\"twitter:label1\" content=\"Tempo di lettura stimato\" \/>\n\t<meta name=\"twitter:data1\" content=\"2 minuti\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\/\/www.fabiogori.ai\/publications\/\",\"url\":\"https:\/\/www.fabiogori.ai\/publications\/\",\"name\":\"Publications - Dr Fabio Gori\",\"isPartOf\":{\"@id\":\"https:\/\/www.fabiogori.ai\/#website\"},\"datePublished\":\"2023-07-25T01:21:07+00:00\",\"dateModified\":\"2023-07-30T05:10:02+00:00\",\"description\":\"Public Speaking about AI for C-level, life sciences, scientific congress, conference\",\"breadcrumb\":{\"@id\":\"https:\/\/www.fabiogori.ai\/publications\/#breadcrumb\"},\"inLanguage\":\"it-IT\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/www.fabiogori.ai\/publications\/\"]}]},{\"@type\":\"BreadcrumbList\",\"@id\":\"https:\/\/www.fabiogori.ai\/publications\/#breadcrumb\",\"itemListElement\":[{\"@type\":\"ListItem\",\"position\":1,\"name\":\"Home\",\"item\":\"https:\/\/fabiogori.ai\/\"},{\"@type\":\"ListItem\",\"position\":2,\"name\":\"Publications\"}]},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/www.fabiogori.ai\/#website\",\"url\":\"https:\/\/www.fabiogori.ai\/\",\"name\":\"Dr Fabio Gori\",\"description\":\"Data Science for R&D in life science and healthcare\",\"publisher\":{\"@id\":\"https:\/\/www.fabiogori.ai\/#\/schema\/person\/91e698d640a31468ff83c06886a33511\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\/\/www.fabiogori.ai\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"it-IT\"},{\"@type\":[\"Person\",\"Organization\"],\"@id\":\"https:\/\/www.fabiogori.ai\/#\/schema\/person\/91e698d640a31468ff83c06886a33511\",\"name\":\"igorfobia\",\"image\":{\"@type\":\"ImageObject\",\"inLanguage\":\"it-IT\",\"@id\":\"https:\/\/www.fabiogori.ai\/#\/schema\/person\/image\/\",\"url\":\"https:\/\/fabiogori.ai\/wp-content\/uploads\/2023\/02\/profile_fabio.jpg\",\"contentUrl\":\"https:\/\/fabiogori.ai\/wp-content\/uploads\/2023\/02\/profile_fabio.jpg\",\"width\":2048,\"height\":2048,\"caption\":\"igorfobia\"},\"logo\":{\"@id\":\"https:\/\/www.fabiogori.ai\/#\/schema\/person\/image\/\"},\"description\":\"Data Scientist for R&D in life science and healthcare. 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\n\t\t\t\t\tPublications\n\t\t\t\t<\/h1>\n\t

\n\t\tPer qualsiasi domanda, non esitate a contattarmi all'indirizzo info@fabiogori.ai\n\t<\/h2>\n\t